DreEX6062630 @ danRer10
Exon Skipping
Gene
ENSDARG00000060481 | atl1
Description
atlastin GTPase 1 [Source:ZFIN;Acc:ZDB-GENE-030131-8003]
Coordinates
chr13:36649296-36649902:+
Coord C1 exon
chr13:36649296-36649400
Coord A exon
chr13:36649508-36649558
Coord C2 exon
chr13:36649846-36649902
Length
51 bp
Sequences
Splice sites
3' ss Seq
GCCATTTCGGTTCCTTCTAGGTG
3' ss Score
9.98
5' ss Seq
CAGGTATAT
5' ss Score
7.88
Exon sequences
Seq C1 exon
GTGGCAGTGCTGCTAATGGACACACAAGGAACCTTCGACAGCCAGTCCACTCTCCGTGACTCAGCTACTGTATTCGCCCTCAGTACCATGATCAGCTCTATGCAG
Seq A exon
GTGTACAACATATCCCAGAATGTTCAGGAAGACGATCTTCAGCATTTGCAG
Seq C2 exon
CTCTTCACCGAATATGGCAGACTGGCTATGGAAGAAACATTTCTCAAACCGTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060481-'7-5,'7-4,8-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0226314=GBP=FE(12.5=100)
A:
PF0226314=GBP=FE(5.9=100)
C2:
PF0226314=GBP=FE(6.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGCTGCTAATGGACACACA
R:
TCTTCCATAGCCAGTCTGCCA
Band lengths:
135-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]