GgaEX6039524 @ galGal4
Exon Skipping
Gene
ENSGALG00000012339 | ATL1
Description
atlastin GTPase 1 [Source:HGNC Symbol;Acc:HGNC:11231]
Coordinates
chr5:57770285-57772404:+
Coord C1 exon
chr5:57770285-57770389
Coord A exon
chr5:57771078-57771128
Coord C2 exon
chr5:57772348-57772404
Length
51 bp
Sequences
Splice sites
3' ss Seq
GTTTCTGTGTTTACTTACAGGTT
3' ss Score
10.86
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GTTGCAGTGCTGCTGATGGACACACAGGGGACCTTCGACAGTCAGTCCACCCTGCGGGATTCAGCCACTGTGTTTGCCCTGAGCACAATGATCAGCTCAATACAG
Seq A exon
GTTTATAACTTGTCGCAGAATGTGCAGGAGGATGATCTGCAGCACCTGCAG
Seq C2 exon
CTGTTCACCGAGTACGGCCGGCTGGCCATGGAGGAAACCTTCCTGAAGCCCTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012339-'2-4,'2-3,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0226314=GBP=FE(12.5=100)
A:
PF0226314=GBP=FE(5.9=100)
C2:
PF0226314=GBP=FE(6.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACCTTCGACAGTCAGTCCA
R:
TGGAAGGGCTTCAGGAAGGTT
Band lengths:
133-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]