RnoEX0012763 @ rn6
Exon Skipping
Gene
ENSRNOG00000005063 | Atl1
Description
atlastin GTPase 1 [Source:RGD Symbol;Acc:1359232]
Coordinates
chr6:92332280-92336560:+
Coord C1 exon
chr6:92332280-92332384
Coord A exon
chr6:92334625-92334675
Coord C2 exon
chr6:92336504-92336560
Length
51 bp
Sequences
Splice sites
3' ss Seq
ACTCCTTACCCCACATCAAGGTC
3' ss Score
5.65
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
GTTGCAGTGTTACTGATGGATACTCAGGGAACCTTTGACAGTCAGTCAACTTTGAGAGATTCGGCCACAGTATTTGCCCTTAGCACAATGATAAGCTCAATACAG
Seq A exon
GTCTACAACTTATCCCAAAATGTCCAGGAGGACGACCTTCAGCATCTCCAG
Seq C2 exon
CTTTTCACTGAGTATGGCAGGTTGGCAATGGAAGAAACATTCCTGAAGCCTTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005063-'10-10,'10-8,11-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0226314=GBP=FE(12.5=100)
A:
PF0226314=GBP=FE(5.9=100)
C2:
PF0226314=GBP=FE(6.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGATGGATACTCAGGGAACC
R:
GTTTCTTCCATTGCCAACCTGC
Band lengths:
132-183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]