DreEX6062879 @ danRer10
Exon Skipping
Gene
ENSDARG00000014101 | pyroxd2
Description
pyridine nucleotide-disulphide oxidoreductase domain 2 [Source:ZFIN;Acc:ZDB-GENE-050506-147]
Coordinates
chr13:40165136-40168129:-
Coord C1 exon
chr13:40167973-40168129
Coord A exon
chr13:40167583-40167737
Coord C2 exon
chr13:40165136-40165242
Length
155 bp
Sequences
Splice sites
3' ss Seq
GTGTTTTGTTTTTGTTTCAGGCC
3' ss Score
11.46
5' ss Seq
CAGGTATCT
5' ss Score
7.33
Exon sequences
Seq C1 exon
TGGCTGTAGACAAGCTGCCAGATTTCTTGGCTGCTCCGAATGGCGCGGATGGAAAAGCGGGTCCTCATCATCAGTGTTCAATCCACCTGAACTGTGAGAGCGTGGAGGTGCTGGAAGACGCTTATTGGGAGGGTCAGCATGGTCGGCCATCCTCCAG
Seq A exon
GCCCATGATAGAAATGACCATTCCCTCAGTGCTGGATCCCACTCTAGCGCCGCCTGGATGTCACGTGGTGTCACTTTTTATACAGTTTACACCATATTTGCTTGAGGGTCGCCGTGCTTGGACTGATGAGGATAAGGAGAGGTTTGGGGACACAG
Seq C2 exon
TATTCGACTGGGTTGAGCGTTACGCACCAGGATTTAAAGCCTCAATAGTAGGCAAAGACATCCTGACCCCTGCTGATCTGGAGAGGGTCTTTGGTCTCACCGGAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014101-'14-19,'14-18,15-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.151 A=0.094 C2=0.000
Domain overlap (PFAM):
C1:
PF0159319=Amino_oxidase=PD(4.3=11.3)
A:
PF0126619=DAO=FE(18.6=100)
C2:
PF0126619=DAO=FE(12.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCAGATTTCTTGGCTGCTC
R:
CGGTGAGACCAAAGACCCTCT
Band lengths:
244-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]