RnoEX6007412 @ rn6
Exon Skipping
Gene
ENSRNOG00000015807 | Pyroxd2
Description
pyridine nucleotide-disulphide oxidoreductase domain 2 [Source:RGD Symbol;Acc:1303232]
Coordinates
chr1:261964046-261967444:-
Coord C1 exon
chr1:261967288-261967444
Coord A exon
chr1:261965679-261965833
Coord C2 exon
chr1:261964046-261964152
Length
155 bp
Sequences
Splice sites
3' ss Seq
CTGCTCCCCCGACATCACAGACC
3' ss Score
5.14
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
TGGCTGTGGACAGGCTGCCAAACTTCCAGGCAGCCCCCAATGCTCCCGGGGACCAGCCACAAGCCCACCATCAGTGTTCCATCCACCTGAACTGTGAAGACACCCTGCTCCTCCACCAGGCCTTTGAAGATGCCAAGGGCGGCCTACCTTCCCAAAG
Seq A exon
ACCTATGATTGAGCTCTGCATCCCTTCATCGCTGGACCCCACCCTGGCTCCAACAGGCTGCCATGTCGTCTCCCTCTTCACTCAGTATACACCCTACACCCTGGCAGGAGGCAAGGTCTGGGACGAGCAAAAGAAAAACACCTACGCAGACAAAG
Seq C2 exon
TGTTTGACTGCATCGAGGCCTATGCCCCCGGCTTCAAGAGATCTGTGCTGGGCAGAGATATCCTCACCCCACAGGACCTAGAGAGGATCTTCGGGCTTCCTGGAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015807-'21-31,'21-29,22-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.288 A=0.009 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAGGCTGCCAAACTTCCAG
R:
GGAAGCCCGAAGATCCTCTCT
Band lengths:
249-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]