GgaEX1047484 @ galGal3
Exon Skipping
Gene
ENSGALG00000007014 | PYROXD2
Description
NA
Coordinates
chr6:23676420-23677009:+
Coord C1 exon
chr6:23676420-23676576
Coord A exon
chr6:23676659-23676813
Coord C2 exon
chr6:23676903-23677009
Length
155 bp
Sequences
Splice sites
3' ss Seq
GCCATGTCTCACTCCTCCAGGCC
3' ss Score
10.11
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
TGGCGGTGGACCGGCTGCCTAGCTTCCTGGCTGCCCCCAACACCCGTGACAGCCAACCTCTGCCCCACCACTGCTGCTCCATCCACCTCAACTGCGAGGGCACACACCTCCTGCACCAGGCTTACACCGAGGCTGCCCACGGGCACCCCTCCAGCAG
Seq A exon
GCCCATGATTGAGCTGTGCATCCCCTCCGCGCTGGACCCGGGGCTGGCCCCTCCAGGCTGCCACGTTGTGTCCCTCTTTACCCAGTACACTCCGTATGAGCTGGCAGGTGGGCAGCCCTGGGACGAGAAGGCTCGGAATGCTTATGCAGACACAG
Seq C2 exon
TGTTCGACTGCATTGAAGCCTATGCCCCAGGCTTCAAGGTGTCTGTCATCGGCAGGGACATCCTGACACCACCTGACCTGGAGAGGATCTTTGGACTGCCCGGTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007014-'13-18,'13-16,14-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.094 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCTAGCTTCCTGGCTG
R:
CGGGCAGTCCAAAGATCCTCT
Band lengths:
245-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]