DreEX6063030 @ danRer10
Exon Skipping
Gene
ENSDARG00000052702 | capn1a
Description
calpain 1, (mu/I) large subunit a [Source:ZFIN;Acc:ZDB-GENE-040426-1263]
Coordinates
chr13:42566586-42570061:-
Coord C1 exon
chr13:42569901-42570061
Coord A exon
chr13:42566857-42567026
Coord C2 exon
chr13:42566586-42566597
Length
170 bp
Sequences
Splice sites
3' ss Seq
GTTCCTGTGCTGTTTTTCAGACA
3' ss Score
9.09
5' ss Seq
GAGGTCAGG
5' ss Score
4.94
Exon sequences
Seq C1 exon
GATGTCATTTGGTGAGTTTTTACGTCAGTTCTCCCGGCTGGAGATTTGCAATCTGACCCCTGATGCTCTGAGTGACGATGATATGAGCCACTGGAACACCATCAAGTTTCATGGAGCCTGGAGGAGAGGAAGCACTGCAGGAGGATGCCGAAATCATCCCA
Seq A exon
ACACGTTCTGGATCAATCCACAGTATAAGATCACACTGCTGGAGGAAGATGATGATCCGGAGGATGAAGAAGTGGCCTGCAGCTTCCTGGTGGCTTTAATGCAGAAAGACCGCAGACGGTACCGCCGCCACGGACAAGATATGCACACTATCGGTTTTGCAATTTATGAG
Seq C2 exon
GTTCCTGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000052702-'11-16,'11-15,14-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.035 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=PD(6.3=34.5),PF0106717=Calpain_III=PU(15.4=43.6)
A:
PF0106717=Calpain_III=FE(35.9=100)
C2:
PF0106717=Calpain_III=FE(1.9=100)
Main Skipping Isoform:
ENSDART00000046066fB1695
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]