DreEX6066936 @ danRer10
Exon Skipping
Gene
ENSDARG00000099137 | LTBP4
Description
latent transforming growth factor beta binding protein 4 [Source:HGNC Symbol;Acc:HGNC:6717]
Coordinates
chr18:49022370-49025212:-
Coord C1 exon
chr18:49025158-49025212
Coord A exon
chr18:49023318-49023443
Coord C2 exon
chr18:49022370-49022513
Length
126 bp
Sequences
Splice sites
3' ss Seq
CGTGTGTGTTTGTGTTGCAGACG
3' ss Score
11.1
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
Exon sequences
Seq C1 exon
TGCGTGGCGTCGTGTGAGCCCGGTTATCAGATCACCAGCACTGCAGAGTGCGTGG
Seq A exon
ACGTGAACGAGTGTGCCAACGAGACGGTGTGTGGAGCTCATGCCTTCTGCCAGAACCTCATCGGCACCTACCACTGTCTGTGCGACCAGGGTTACGAGTCCACCGGAGATGGCAAGATCTGTGTGG
Seq C2 exon
ACATAAACGAGTGTGAGGCGATGCAGGGTGTGTGTGGATCTGCGCGCTGCTGGAATGTCGAGGGCTCGTTCACGTGTGAATGTGAGAACGGACAGGAGGAATTTGACCCTATTGCTGGCCGCTGTTTGAGCAGAGAGGGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099137-'32-30,'32-29,33-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=PD(38.1=84.2),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=85.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGAGCCCGGTTATCAGAT
R:
GTGCCCTCTCTGCTCAAACAG
Band lengths:
186-312
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]