MmuEX0027278 @ mm9
Exon Skipping
Gene
ENSMUSG00000040488 | Ltbp4
Description
latent transforming growth factor beta binding protein 4 [Source:MGI Symbol;Acc:MGI:1321395]
Coordinates
chr7:28099256-28104775:-
Coord C1 exon
chr7:28104644-28104775
Coord A exon
chr7:28104430-28104555
Coord C2 exon
chr7:28099256-28099402
Length
126 bp
Sequences
Splice sites
3' ss Seq
CGGCCTGCTGGTGTTTGCAGATG
3' ss Score
8.57
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
ACATTGATGAGTGCCGAGAATACGGCTCTGCGATTTGTGGTGCCCAGCGCTGTGAGAACACCCCGGGCTCCTACCGCTGCACACCAGCCTGCGACCCTGGCTATCAGCCTACACCAGGGGGCGGGTGCCAAG
Seq A exon
ATGTGGATGAATGCCGGAACCGGTCTTTCTGCGGCGCCCATGCTATGTGCCAGAATCTGCCTGGGTCCTTTCAGTGCGTCTGTGACCAAGGCTACGAAGGGGCACGGGACGGACGTCACTGCGTGG
Seq C2 exon
ATGTGAATGAGTGTGAGACACTACAGGGCGTGTGTGGCTCCGCGCTGTGTGAAAATGTTGAAGGCTCCTTCCTGTGTGTCTGCCCCAATAGCCCTGAGGAATTTGATCCCATGACTGGACGCTGTGTTCCCCCACGGGCTCCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040488-'35-31,'35-30,37-31
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.160
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.6),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=84.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATACGGCTCTGCGATTTGTGG
R:
GGAACACAGCGTCCAGTCATG
Band lengths:
243-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: