DreEX6067090 @ danRer10
Exon Skipping
Gene
ENSDARG00000103383 | dnah9
Description
dynein, axonemal, heavy chain 9 [Source:ZFIN;Acc:ZDB-GENE-020925-1]
Coordinates
chr12:188375-188871:-
Coord C1 exon
chr12:188721-188871
Coord A exon
chr12:188526-188640
Coord C2 exon
chr12:188375-188443
Length
115 bp
Sequences
Splice sites
3' ss Seq
TGTGTTTATCGGTCTTCCAGGTT
3' ss Score
10.46
5' ss Seq
CCCGTAAAT
5' ss Score
-3.11
Exon sequences
Seq C1 exon
GTTTTGGACATGTTTGGCAGACTGCTGGAGCAGCCGCTGATAGCAGCCGAGGCTCAGGCCAGATATCCCATCCTGATCAAACTGTTTGACAAGCAGCTGGAAGACTGTAAGACGATTTTCAAGAAGCAGATGCAGATGGAGGAAACCCGAG
Seq A exon
GTTATTCTCCTGTCTCTAAGAACATGCCTGCGGTTTCTGGAGGACTGAAGTTTGTCCAGGAATTGCAGGAACGCATACAGACTCTTTACAATAACTTCAGATTCATCAACCACCC
Seq C2 exon
ATGTATGGAGTCTGTGGATGCAAAGGAGATGATGCAGAAATATGATGAGCTCATGCGGCAGCTCAAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103383-'8-9,'8-8,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.051 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(11.8=100)
A:
PF083857=DHC_N1=FE(6.5=100)
C2:
PF083857=DHC_N1=FE(4.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGGACATGTTTGGCAGACTG
R:
TGTTTGAGCTGCCGCATGAG
Band lengths:
218-333
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]