MmuEX6086201 @ mm10
Exon Skipping
Gene
ENSMUSG00000056752 | Dnah9
Description
dynein, axonemal, heavy chain 9 [Source:MGI Symbol;Acc:MGI:1289279]
Coordinates
chr11:66121826-66126749:-
Coord C1 exon
chr11:66126599-66126749
Coord A exon
chr11:66125113-66125227
Coord C2 exon
chr11:66121826-66121894
Length
115 bp
Sequences
Splice sites
3' ss Seq
ATAGTTGTTCATGTCTCCAGGAT
3' ss Score
6.84
5' ss Seq
TCTGTGAGT
5' ss Score
7
Exon sequences
Seq C1 exon
CTACTGGACATCACAGGAACCCTCATCAAAAGACCCCTGGTAGCACAGGATGTATCACAAAAATACCTGGCCCTCATCCGAATGTTCAGCACAGAACTGGATGCTGTGAGGGTCATCTACAGTCAGCACATCCAGAAGGAGGCAGAGCATG
Seq A exon
GATTCTCCCCCGTGCACAAGAACATGCCCACTATGGCTGGCGGCATCTGCTGGGCACAGGAACTGAGGCAGCGCGTCAAGGGTCCCTTTGGCAACTTCAAAAACATACCACATCT
Seq C2 exon
GTACTTGCAATCTGCTGAAGGAAAGCGAATGATACAAAAATACGAAGACTTGCTCTCCCTGCTAGAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056752-'9-15,'9-13,10-15
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.090 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(11.4=100)
A:
PF083857=DHC_N1=FE(6.5=100)
C2:
PF083857=DHC_N1=FE(4.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGGACATCACAGGAACCCT
R:
TCTTCTAGCAGGGAGAGCAAGT
Band lengths:
218-333
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types