MmuEX0015108 @ mm10
Exon Skipping
Gene
ENSMUSG00000056752 | Dnah9
Description
dynein, axonemal, heavy chain 9 [Source:MGI Symbol;Acc:MGI:1289279]
Coordinates
chr11:66119595-66125227:-
Coord C1 exon
chr11:66125113-66125227
Coord A exon
chr11:66121826-66121894
Coord C2 exon
chr11:66119595-66119721
Length
69 bp
Sequences
Splice sites
3' ss Seq
CTTTTCTTGTGAATTGATAGGTA
3' ss Score
7.02
5' ss Seq
AGAGTAAGC
5' ss Score
6.31
Exon sequences
Seq C1 exon
GATTCTCCCCCGTGCACAAGAACATGCCCACTATGGCTGGCGGCATCTGCTGGGCACAGGAACTGAGGCAGCGCGTCAAGGGTCCCTTTGGCAACTTCAAAAACATACCACATCT
Seq A exon
GTACTTGCAATCTGCTGAAGGAAAGCGAATGATACAAAAATACGAAGACTTGCTCTCCCTGCTAGAAGA
Seq C2 exon
GTATGAGAGAAGACTTTATGAGGACTGGTGTCAGACGGTATCTGAAAAGTCACAGTACAATCTTTCCCTACCTCTTTTGCATCGTGACCCCAACACAAAGCAGCTCTCTGTCAACTTTAACCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056752-'10-16,'10-15,12-16
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.090 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(6.5=100)
A:
PF083857=DHC_N1=FE(4.0=100)
C2:
PF083857=DHC_N1=FE(7.2=100)
Main Skipping Isoform:
ENSMUST00000080665fB8928
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCTGCTGGGCACAGGAAC
R:
TGTTGGGGTCACGATGCAAAA
Band lengths:
167-236
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types