GgaEX6015792 @ galGal3
Exon Skipping
Gene
ENSGALG00000001111 | DNAH9
Description
NA
Coordinates
chr18:1025580-1029022:+
Coord C1 exon
chr18:1025580-1025694
Coord A exon
chr18:1027600-1027668
Coord C2 exon
chr18:1028896-1029022
Length
69 bp
Sequences
Splice sites
3' ss Seq
TTTGTCTGTTTTGCTACCAGCTG
3' ss Score
8.36
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GATTCCCTCCTGTGCATAAGAACATGCCGCTGGTAGCTGGAGCGCTGCGCTGGGCTCAGGAGCTGCGGGCGCGGATCCAGGCGCAGTTTGGTCCCTTCAGACACATCACACACCC
Seq A exon
CTGCCTGGACTCTCCTGAAGGAAGAAGGGTGTTGGAGAGGTATGAAGAAATGCTCCAGTTGCTCGACAG
Seq C2 exon
GTATCAAGAAAAACTGTACATAAACTGGTCCCAGACAGTCTCTGAAAAGTCACAGTACAACCTCACTCAACCACTCATCCGGCGAGAGCCAGAAACCAAACTGCTCACGGTCAATTTTGATCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001111-'9-10,'9-9,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(6.5=100)
A:
PF083857=DHC_N1=FE(4.0=100)
C2:
PF083857=DHC_N1=FE(7.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAGAACATGCCGCTGGTAGC
R:
CGGATGAGTGGTTGAGTGAGG
Band lengths:
180-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]