DreEX0027514 @ danRer10
Exon Skipping
Gene
ENSDARG00000103383 | dnah9
Description
dynein, axonemal, heavy chain 9 [Source:ZFIN;Acc:ZDB-GENE-020925-1]
Coordinates
chr12:185031-188640:-
Coord C1 exon
chr12:188526-188640
Coord A exon
chr12:188375-188443
Coord C2 exon
chr12:185031-185157
Length
69 bp
Sequences
Splice sites
3' ss Seq
CTTTATATGTGTTATTATAGATG
3' ss Score
6.93
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
GTTATTCTCCTGTCTCTAAGAACATGCCTGCGGTTTCTGGAGGACTGAAGTTTGTCCAGGAATTGCAGGAACGCATACAGACTCTTTACAATAACTTCAGATTCATCAACCACCC
Seq A exon
ATGTATGGAGTCTGTGGATGCAAAGGAGATGATGCAGAAATATGATGAGCTCATGCGGCAGCTCAAACA
Seq C2 exon
ATACTCATCTAAACTGTATGACATCTGGACCAGCTCTGTGGCCGAGAAGTCGCAGTTTAATCTGAACAAGCCGCTGATATCCCGAGAGCCCAGATCCAGACTGCTCTCTGTCAACTTCAGCCCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103383-'9-10,'9-9,11-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.051 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(6.5=100)
A:
PF083857=DHC_N1=FE(4.0=100)
C2:
PF083857=DHC_N1=FE(7.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCCAGGAATTGCAGGAACG
R:
AGAGAGCAGTCTGGATCTGGG
Band lengths:
172-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]