HsaEX6021165 @ hg19
Exon Skipping
Gene
ENSG00000007174 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:2953]
Coordinates
chr17:11543587-11550515:+
Coord C1 exon
chr17:11543587-11543701
Coord A exon
chr17:11547948-11548016
Coord C2 exon
chr17:11550389-11550515
Length
69 bp
Sequences
Splice sites
3' ss Seq
TTTCTCTTTTGTACGAGTAGTTG
3' ss Score
3.08
5' ss Seq
AAAGTAAGC
5' ss Score
7.31
Exon sequences
Seq C1 exon
GGTTCTCCCCGGTGCACAAGAACATGCCCACCGTGGCTGGCGGCCTCCGCTGGGCACAGGAGCTGAGGCAGCGCATCCAGGGTCCTTTCAGCAACTTTGGACGCATCACACACCC
Seq A exon
TTGCATGGAATCTGCAGAAGGAAAGCGAATGCAACAAAAATATGAAGATATGCTGTCATTGCTAGAAAA
Seq C2 exon
GTATGAGACAAGACTTTATGAGGATTGGTGCCGGACAGTATCAGAGAAGTCACAGTACAATCTTTCCCAACCACTTCTAAAACGTGACCCAGAGACGAAGGAGATCACTATCAACTTTAACCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007174-'9-10,'9-9,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.051 A=0.083 C2=0.116
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(6.5=100)
A:
PF083857=DHC_N1=FE(4.0=100)
C2:
PF083857=DHC_N1=FE(7.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGCACAGGAGCTGAGG
R:
TCTCCTTCGTCTCTGGGTCAC
Band lengths:
169-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)