RnoEX6047726 @ rn6
Exon Skipping
Gene
ENSRNOG00000004171 | Dnah9
Description
dynein, axonemal, heavy chain 9 [Source:RGD Symbol;Acc:621799]
Coordinates
chr10:52659811-52665686:-
Coord C1 exon
chr10:52665572-52665686
Coord A exon
chr10:52662037-52662105
Coord C2 exon
chr10:52659811-52659937
Length
69 bp
Sequences
Splice sites
3' ss Seq
CCTTTCTTGTAAATTGATAGGTG
3' ss Score
6.67
5' ss Seq
AGAGTAAGC
5' ss Score
6.31
Exon sequences
Seq C1 exon
GATTCTCTCCCGTGCACAAAAATATGCCCACTATGGCTGGGGGCATCCGCTGGGCACAGGAACTGAGGCAGCGCATCAAGGGTCCCTTCAGCAACTTCAAAAATATACCACACTG
Seq A exon
GTGCTTGCAATCTGCTGAAGGAAAGAGAATGATACAAAAATATGAAGATTTGCTCACCCTGCTAGAAGA
Seq C2 exon
GTATGAGAGAAGACTTTATGAGGACTGGTGTCAGACAGTGTCTGAGAAGTCACAGCGCAATCTCTCCCTACCACTTTTGCATCGTGACCCCATCACAAAGCAGCTCTCTGTCAACTTTAACTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004171-'12-12,'12-11,13-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.051 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(6.5=100)
A:
PF083857=DHC_N1=FE(4.0=100)
C2:
PF083857=DHC_N1=FE(7.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGTGCACAAAAATATGCCC
R:
TAGGGAGAGATTGCGCTGTGA
Band lengths:
177-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]