BtaEX6087278 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000022509 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr19:31001183-31007810:+
Coord C1 exon
chr19:31001183-31001297
Coord A exon
chr19:31005493-31005561
Coord C2 exon
chr19:31007684-31007810
Length
69 bp
Sequences
Splice sites
3' ss Seq
TCCCTCTTTTGTACGGGTAGTTG
3' ss Score
5.53
5' ss Seq
AAAGTAAGC
5' ss Score
7.31
Exon sequences
Seq C1 exon
GGTTCTCCTCCGTGCACAAGAACATGCCCACTGTGGCCGGGGGCCTCCGCTGGGCACAGGAGCTGAGGCAGCGCATCCAGGGTCCCTTCGACAACTTTAGATGCATGACACACCC
Seq A exon
TTGCATGGAATCTGCCGAAGCAACGCGTATGATACAAAAATATGAAGACACGCTTTCATTGCTGGAAAA
Seq C2 exon
GTATGAAACAAGACTTTATGGGGACTGGTGTCAAACAGTAGCAGAGAAGTCCCAGTACAACCTTTCACGGCCACTTCTGAGACGTGACCCGGAGACAAAGCAGATCACTGTCAACTTTAGTCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022509-'11-13,'11-12,12-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.077 A=0.000 C2=0.023
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(6.5=100)
A:
PF083857=DHC_N1=FE(3.9=100)
C2:
PF083857=DHC_N1=FE(7.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGAACATGCCCACTGTGG
R:
AGAAGTGGCCGTGAAAGGTTG
Band lengths:
178-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]