GgaEX6015793 @ galGal3
Exon Skipping
Gene
ENSGALG00000001111 | DNAH9
Description
NA
Coordinates
chr18:1024532-1027668:+
Coord C1 exon
chr18:1024532-1024682
Coord A exon
chr18:1025580-1025694
Coord C2 exon
chr18:1027600-1027668
Length
115 bp
Sequences
Splice sites
3' ss Seq
AGTTTCCGTGTTCCCCCCAGGAT
3' ss Score
9.58
5' ss Seq
CCCGTGCGT
5' ss Score
6.27
Exon sequences
Seq C1 exon
CTGCTGGAGATGTTTGGGAGCCTTTTGGAGCGGCCAGTAATCGCTGCGGATGCTGCTGGCAAATACCCTGACCTCATCCGCATGTTCAGCAGTGCCTTGAGTGATGCTAGGCTGATCTACTCCAGGCACGTACGGGCAGAGCTGGAGCTTG
Seq A exon
GATTCCCTCCTGTGCATAAGAACATGCCGCTGGTAGCTGGAGCGCTGCGCTGGGCTCAGGAGCTGCGGGCGCGGATCCAGGCGCAGTTTGGTCCCTTCAGACACATCACACACCC
Seq C2 exon
CTGCCTGGACTCTCCTGAAGGAAGAAGGGTGTTGGAGAGGTATGAAGAAATGCTCCAGTTGCTCGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001111-'8-9,'8-8,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(8.6=100)
A:
PF083857=DHC_N1=FE(6.5=100)
C2:
PF083857=DHC_N1=FE(4.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTGGAGATGTTTGGGAGC
R:
CTGTCGAGCAACTGGAGCATT
Band lengths:
220-335
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]