BtaEX0011637 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000022509 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr19:30999668-31005561:+
Coord C1 exon
chr19:30999668-30999818
Coord A exon
chr19:31001183-31001297
Coord C2 exon
chr19:31005493-31005561
Length
115 bp
Sequences
Splice sites
3' ss Seq
CTGCTGTGCCCTGTCCCCAGGGT
3' ss Score
10.85
5' ss Seq
CCCGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
CTGCTGGACATAGCAGGAAGCCTCCTGGAGAGACCAGTGGTAGCACAGGATGCCTCTGAAAGATACCTGGTGCTCATCCGCATGTTTAGCGAGGATCTGGATGCTGTGAGGCTGATCCACAGTCAGCGTGTCCAGGAGGAGGCAGAGCATG
Seq A exon
GGTTCTCCTCCGTGCACAAGAACATGCCCACTGTGGCCGGGGGCCTCCGCTGGGCACAGGAGCTGAGGCAGCGCATCCAGGGTCCCTTCGACAACTTTAGATGCATGACACACCC
Seq C2 exon
TTGCATGGAATCTGCCGAAGCAACGCGTATGATACAAAAATATGAAGACACGCTTTCATTGCTGGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022509_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.039 A=0.077 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(8.6=100)
A:
PF083857=DHC_N1=FE(6.5=100)
C2:
PF083857=DHC_N1=FE(3.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGACATAGCAGGAAGC
R:
TTTTCCAGCAATGAAAGCGTGT
Band lengths:
218-333
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development