DreEX6067717 @ danRer10
Exon Skipping
Gene
ENSDARG00000073771 | tbc1d12b
Description
TBC1 domain family, member 12b [Source:ZFIN;Acc:ZDB-GENE-121214-108]
Coordinates
chr12:5396176-5399162:-
Coord C1 exon
chr12:5399091-5399162
Coord A exon
chr12:5396523-5396651
Coord C2 exon
chr12:5396176-5396285
Length
129 bp
Sequences
Splice sites
3' ss Seq
TGCCTTTCTTTTGGCTGCAGGTT
3' ss Score
9.85
5' ss Seq
CTGGTACTG
5' ss Score
4.41
Exon sequences
Seq C1 exon
GGTGGGCCGTATCATGATCTCCTGCACAGTGTTCTGGGGGCTTACACCTGCTACAGACCTGATGTGGGATAT
Seq A exon
GTTCAGGGCATGTCCTTCATTGCTGCTGTGTTGATTCTCAATCTGGAGGAGGCCGATGCTTTCATCGCCTTCGCCAATCTCCTCAACAAACCCTGTCAGATGGCTTTCTTCAGAGTGGACCACGAGCTG
Seq C2 exon
ATGCTGAAGTACTTTGCAGCGTTTGAGGTGTTTTTTGAGGAAAACCTGCCCAGACTGTTTAATCACTTCAAGAGTTACAACCTCACGCCTGACCTGTATCTGATAGACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000073771-'10-11,'10-10,11-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(10.2=100)
A:
PF0056613=RabGAP-TBC=FE(18.7=100)
C2:
PF0056613=RabGAP-TBC=FE(16.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGGCCGTATCATGATCTCC
R:
TCTATCAGATACAGGTCAGGCGT
Band lengths:
178-307
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]