GgaEX1057316 @ galGal4
Exon Skipping
Gene
ENSGALG00000015546 | TBC1D14
Description
TBC1 domain family member 14 [Source:RefSeq peptide;Acc:NP_001239243]
Coordinates
chr4:79489501-79501571:+
Coord C1 exon
chr4:79489501-79489572
Coord A exon
chr4:79491260-79491388
Coord C2 exon
chr4:79501313-79501571
Length
129 bp
Sequences
Splice sites
3' ss Seq
AACACTTCTCCTTTCTTCAGGTA
3' ss Score
11.21
5' ss Seq
CTTGTAAGT
5' ss Score
8
Exon sequences
Seq C1 exon
GGCGGTCCTTACCATGACACATTGCACAGTATTTTAGGAGCCTATACTTGTTACAGACCTGATGTAGGATAT
Seq A exon
GTACAAGGCATGTCTTTCATTGCAGCAGTACTGATTTTGAACTTGGATACTGCAGATGCCTTCATTGCATTTTCTAACCTTTTAAATAAGCCCTGTCAAATGGCGTTTTTCCGTGTGGACCATGGCCTT
Seq C2 exon
GATATTCACATTGTACAGCAAATCTTTGCCACTAGACTTGGCGTGTCGTGTCTGGGATGTGTTCTGCCGTGATGGAGAAGAGTTCTTATTTCGTACAGCCCTGGGAATATTAAAACTTTTTGAAGATATTTTGACCAAAATGGATTTCATTCATATAGCCCAGTTTTTAACGAAGCTACCAGAAGACCTACCTTCAGAAGAATTCTTTACATCTATTGCTGCCATTCAGATGCAAAGTAGAAACAAAAAGTGGGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015546_MULTIEX2-7/9=6-9
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(10.1=100)
A:
PF0056613=RabGAP-TBC=FE(18.4=100)
C2:
PF0056613=RabGAP-TBC=PD(19.7=51.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCCTTACCATGACACATTGCA
R:
AGGTCTTCTGGTAGCTTCGTT
Band lengths:
258-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]