DreEX0077405 @ danRer10
Exon Skipping
Gene
ENSDARG00000003520 | tbc1d14
Description
TBC1 domain family, member 14 [Source:ZFIN;Acc:ZDB-GENE-030131-6136]
Coordinates
chr7:39424907-39427766:+
Coord C1 exon
chr7:39424907-39424978
Coord A exon
chr7:39427450-39427578
Coord C2 exon
chr7:39427657-39427766
Length
129 bp
Sequences
Splice sites
3' ss Seq
TCATCTGTTCTCTGGTGTAGGTG
3' ss Score
11.39
5' ss Seq
CTTGTGAGT
5' ss Score
7.15
Exon sequences
Seq C1 exon
GGGGGCCCATACCATGATGTATTGCACAGCATTCTGGGAGCTTACACTTGCTATCGTCCCGATGTGGGTTAT
Seq A exon
GTGCAGGGAATGTCCTTTATAGCAGCTGTGTTGATCCTCAACCTGGACACTGCTGATGCCTTCATTGCATTTGCTAATTTGTTGAACAAGCCTTGTCAAATGGCTTTCTATAGAGTGGACCACAGCCTT
Seq C2 exon
ATGTTGACATACTTTGCGGCATTTGAAGTGTTCTTTGAAGAAAATCTACCAAAGCTTTTTGCACATTTTAAAAACAACAATCTGTCCTCTGATATTTATTTAATCGACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000003520-'14-18,'14-17,16-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(10.0=100)
A:
PF0056613=RabGAP-TBC=FE(18.3=100)
C2:
PF0056613=RabGAP-TBC=FE(15.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGGCCCATACCATGATGTA
R:
ATCAGAGGACAGATTGTTGTTTTT
Band lengths:
165-294
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]