GgaEX1057316 @ galGal3
Exon Skipping
Gene
ENSGALG00000015546 | TBC1D14
Description
NA
Coordinates
chr4:82882790-82887703:+
Coord C1 exon
chr4:82882790-82882861
Coord A exon
chr4:82884549-82884677
Coord C2 exon
chr4:82887594-82887703
Length
129 bp
Sequences
Splice sites
3' ss Seq
AACACTTCTCCTTTCTTCAGGTA
3' ss Score
11.21
5' ss Seq
CTTGTAAGT
5' ss Score
8
Exon sequences
Seq C1 exon
GGCGGTCCTTACCATGACACATTGCACAGTATTTTAGGAGCCTATACTTGTTACAGACCTGATGTAGGATAT
Seq A exon
GTACAAGGCATGTCTTTCATTGCAGCAGTACTGATTTTGAACTTGGATACTGCAGATGCCTTCATTGCATTTTCTAACCTTTTAAATAAGCCCTGTCAAATGGCGTTTTTCCGTGTGGACCATGGCCTT
Seq C2 exon
ATGTTGACTTATTTTGCTGCATTTGAGGTATTCTTTGAAGAAAATCTGCCAAAGCTATTTGCTCACTTCAAAAAAAATAACTTAACTCCAGATATCTATCTTATTGATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015546-'25-24,'25-23,26-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(10.1=100)
A:
PF0056613=RabGAP-TBC=FE(18.4=100)
C2:
PF0056613=RabGAP-TBC=FE(15.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCCTTACCATGACACATTGCA
R:
GCAAATAGCTTTGGCAGATTTTCT
Band lengths:
131-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]