DreEX6067862 @ danRer10
Exon Skipping
Gene
ENSDARG00000077582 | ank3b
Description
ankyrin 3b [Source:ZFIN;Acc:ZDB-GENE-060621-2]
Coordinates
chr12:7658440-7675980:-
Coord C1 exon
chr12:7675921-7675980
Coord A exon
chr12:7665418-7665541
Coord C2 exon
chr12:7658440-7658542
Length
124 bp
Sequences
Splice sites
3' ss Seq
ATGGTGTGTTTTTCTGCTAGGTG
3' ss Score
9.93
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
TTCGTAGAGCCAATGTGCCTGAAATGCTCATTGAGGACTATATTTCAGATGTTGAAGAAG
Seq A exon
GTGAGGATGCGATGACCGGAGACACAGACAAATATCTGGGGCCGCAGGATCTGCGTGAGCTCGGAGACGACTCTCTGCCTCAGGAAGGATATGTTGGATTTAGTGTTGGAGCCCGAACGGCCAG
Seq C2 exon
CCTGCGCTCCTTCAGTTCGGATAGGTCCAACACTCTCAACCGGAGCTCCTTCGCCCGCGACAGCATGATGATCGAAGAGATCCTGGCGCCCACCAAGGACACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077582-'33-30,'33-28,35-30=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.320 A=0.551 C2=0.208
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTAGAGCCAATGTGCCTGAA
R:
TTGGTGGGCGCCAGGATC
Band lengths:
154-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]