MmuEX0004925 @ mm10
Exon Skipping
Gene
ENSMUSG00000069601 | Ank3
Description
ankyrin 3, epithelial [Source:MGI Symbol;Acc:MGI:88026]
Coordinates
chr10:69904198-69932496:+
Coord C1 exon
chr10:69904198-69904270
Coord A exon
chr10:69927695-69927818
Coord C2 exon
chr10:69932394-69932496
Length
124 bp
Sequences
Splice sites
3' ss Seq
GGCTTGTTCTCCACCTGCAGGTG
3' ss Score
10.84
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
ACCATCACGGAGAAGCACAAAATGAATGTCCCAGAAACGATGAATGAAGTCCTCGATATGTCAGACGATGAAG
Seq A exon
GTGAAGATGCCATCACAGGGGACACTGACAAGTATCTCGGGCCACAGGACCTTAAGGAGCTAGGTGATGACTCCCTGCCAGCAGAAGGTTACGTAGGCTTCAGTCTTGGAGCCCGTTCTGCCAG
Seq C2 exon
CCTCCGCTCCTTCAGTTCGGATAGGTCCTACACCTTGAACAGAAGCTCCTACGCAAGGGACAGCATGATGATAGAGGAACTTCTGGTACCATCCAAAGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000069601-'56-83,'56-79,64-83=AN
Average complexity
A_C3
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.960 A=0.381 C2=0.004
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
ENSMUSP00000090087, ENSMUSP00000090088, ENSMUSP00000090089, ENSMUSP00000090090, ENSMUSP00000138095, ENSMUSP00000138123, ENSMUSP00000138285, ENSMUSP00000138326, ENSMUSP00000138337, ENSMUSP00000138347, ENSMUSP00000138348, ENSMUSP00000138375, ENSMUSP00000138413, ENSMUSP00000138481, ENSMUSP00000138586, ENSMUSP00000138623, ENSMUSP00000138671, ENSMUSP00000138686, ENSMUSP00000138770, ENSMUSP00000151906
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCATCACGGAGAAGCACAAA
R:
CTGCTCTTTGGATGGTACCAGA
Band lengths:
176-300
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types