RnoEX6062476 @ rn6
Exon Skipping
Gene
ENSRNOG00000053288 | Ank3
Description
ankyrin 3 [Source:RGD Symbol;Acc:620157]
Coordinates
chr20:20358748-20385590:+
Coord C1 exon
chr20:20358748-20358810
Coord A exon
chr20:20380700-20380823
Coord C2 exon
chr20:20385488-20385590
Length
124 bp
Sequences
Splice sites
3' ss Seq
GGCTTGTTCTCCACCTGCAGGTG
3' ss Score
10.84
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
TTGGTAAAGCCAGCGCCCCCGAAAAGCTCAGTGATGGGGAATATATCTCAGATGGTGAAGAAG
Seq A exon
GTGAAGATGCCATCACAGGGGACACTGACAAGTATCTCGGGCCACAGGACCTCAAGGAGCTGGGCGATGACTCCCTGCCTGCCGAGGGCTATGTGGGCTTCAGTCTCGGAGCCCGTTCTGCCAG
Seq C2 exon
CCTTCGCTCCTTCAGTTCGGATAGGTCCTACACCCTGAACAGAAGCTCCTATGCGCGGGACAGCATGATGATCGAGGAGCTTCTGGTGCCATCCAAAGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053288-'38-51,'38-47,48-51=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.470 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSRNOT00000079630fB1067
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTAAAGCCAGCGCCCC
R:
GCTCTTTGGATGGCACCAGAA
Band lengths:
163-287
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]