DreEX6068503 @ danRer10
Exon Skipping
Gene
ENSDARG00000007906 | lrp2b
Description
low density lipoprotein receptor-related protein 2b [Source:ZFIN;Acc:ZDB-GENE-111115-1]
Coordinates
chr12:16127063-16127624:+
Coord C1 exon
chr12:16127063-16127188
Coord A exon
chr12:16127293-16127412
Coord C2 exon
chr12:16127493-16127624
Length
120 bp
Sequences
Splice sites
3' ss Seq
GTGCTGTCTGTGGTCAACAGCTG
3' ss Score
6.84
5' ss Seq
GCGGTACAT
5' ss Score
4.89
Exon sequences
Seq C1 exon
CGGATCGAACCTGTGCACCTGGCTTAGTGAAATGTGACACCACCAACATCTGCATTCCTTCGAGCAGCCTGTGTGATGGCCATAACAACTGTGGGGATAACAGTGATGAAAATCCACTCTTTTGTG
Seq A exon
CTGGACGAACGTGCTCTGCAGATGAGTTCCGCTGTGATAGTGGGAAGTGTATTCCCCAGTTTTGGGTGTGTGATCGCATCTCAGATTGTTTGGATGGCACAGATGAGCCTCCCACTTGCG
Seq C2 exon
AGGATCACATTTATACTTGTAGCCCTCAGCAGTTCAACTGCGCGAATGGAAACTGTATTCAGCAATCATGGGTATGTGATGGCAACAATGACTGTGGAGACAACAGTGATGAGGCCCAGGAGCTGCAGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000007906-'53-57,'53-56,54-57=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=93.0)
A:
PF0005713=Ldl_recept_a=WD(100=92.7)
C2:
PF0005713=Ldl_recept_a=WD(100=88.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACCTGTGCACCTGGCTTAG
R:
CTCCTGGGCCTCATCACTGTT
Band lengths:
242-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]