MmuEX6101922 @ mm10
Exon Skipping
Gene
ENSMUSG00000027070 | Lrp2
Description
low density lipoprotein receptor-related protein 2 [Source:MGI Symbol;Acc:MGI:95794]
Coordinates
chr2:69475380-69478697:-
Coord C1 exon
chr2:69478572-69478697
Coord A exon
chr2:69477010-69477132
Coord C2 exon
chr2:69475380-69475511
Length
123 bp
Sequences
Splice sites
3' ss Seq
ATCTTGTGCCTGTCCTCCAGCCT
3' ss Score
7.01
5' ss Seq
GTGGTAAGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
CTCCCATCACTTGCCAGCCGGACTTCGCAAAATGCCAGACTACAAACATTTGTGTTCCCCGAGCTTTCTTGTGTGATGGAGACAATGACTGTGGAGATGGGAGCGACGAGAACCCCATTTACTGCG
Seq A exon
CCTCACACACATGCCGCAGCAATGAGTTCCAGTGCGTCTCCCCCCACCGGTGTATCCCAAGCTATTGGTTCTGTGATGGGGAAGCCGACTGTGTGGATAGCTCGGATGAGCCTGACACTTGTG
Seq C2 exon
GGCATTCTCTAAACAGCTGCTCAGCCAATCAGTTCCACTGTGATAACGGCAGGTGCATCTCAAGTAGCTGGGTCTGTGATGGTGATAATGACTGCGGAGACATGAGTGACGAGGACCAGCGACATCACTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027070-'55-54,'55-53,57-54=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=93.0)
A:
PF0005713=Ldl_recept_a=WD(100=92.9)
C2:
PF0005713=Ldl_recept_a=WD(100=88.9)
Main Skipping Isoform:
ENSMUST00000080953fB2267
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCATCACTTGCCAGCC
R:
TGGTCCTCGTCACTCATGTCT
Band lengths:
244-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types