RnoEX6017284 @ rn6
Exon Skipping
Gene
ENSRNOG00000056184 | Lrp2
Description
LDL receptor related protein 2 [Source:RGD Symbol;Acc:68407]
Coordinates
chr3:55713305-55716656:-
Coord C1 exon
chr3:55716531-55716656
Coord A exon
chr3:55714947-55715069
Coord C2 exon
chr3:55713305-55713436
Length
123 bp
Sequences
Splice sites
3' ss Seq
ATCTTGTGCTTGTCCTCTAGCCT
3' ss Score
7.49
5' ss Seq
GTGGTAAGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
CTCCCCACACTTGCCCGCCGGATTTCACAAAATGCCAGACCACGAATATTTGTGTTCCCCGAGCTTTCTTGTGTGATGGAGACAATGACTGTGGAGACGGGAGTGACGAGAACCCCATTTACTGCG
Seq A exon
CCTCACACACATGCCGCAGCAACGAGTTCCAGTGCCTCTCCCCTCAGCGGTGTATTCCAAGCTATTGGTTCTGTGACGGTGAAGCCGACTGTGCAGATGGCTCGGATGAACCTGACACTTGTG
Seq C2 exon
GGCATTCTGTGAACACCTGCAGGGCCAGTCAGTTCCAGTGTGATAATGGCAGGTGCATCTCAGGCAATTGGGTCTGTGATGGTGATAACGACTGTGGGGACATGAGTGACGAGGACCAGCGGCATCACTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056184-'57-67,'57-66,59-67=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=93.0)
A:
PF0005713=Ldl_recept_a=WD(100=92.9)
C2:
PF0005713=Ldl_recept_a=WD(100=88.9)
Main Skipping Isoform:
ENSRNOT00000082624fB8023
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGCCGGATTTCACAAAATG
R:
AGTGATGCCGCTGGTCCT
Band lengths:
242-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]