DreEX6038540 @ danRer10
Exon Skipping
Gene
ENSDARG00000102506 | lrp2a
Description
low density lipoprotein receptor-related protein 2a [Source:ZFIN;Acc:ZDB-GENE-050119-2]
Coordinates
chr9:48901361-48905436:+
Coord C1 exon
chr9:48901361-48901486
Coord A exon
chr9:48901668-48901787
Coord C2 exon
chr9:48905305-48905436
Length
120 bp
Sequences
Splice sites
3' ss Seq
TTTTGTCCATCACTCCTCAGCCA
3' ss Score
6.73
5' ss Seq
GTAGTAAGT
5' ss Score
8.01
Exon sequences
Seq C1 exon
CTGAGAGGACTTGCCAGCCAGAACACACCAAATGCCAGTCGACTAATATCTGCATCCCGCGCTCGTATCTATGTGATGGAGATAATGACTGCGGAGACAACAGTGACGAGAGTCCCACACACTGCG
Seq A exon
CCACATCTACATGCTCCCACAATGAGTTCCGCTGCTCGAGTGGACGCTGTATTCCTGGCCACTGGTACTGTGATGGAGGAACAGACTGTAATGATGGATCTGATGAGCCCATTACCTGTA
Seq C2 exon
CCTCTCTGGTAAGGACCTGCAACTCTGAGCAGTTTCGCTGCGATGACGGACGCTGCATCGCCTCCTCCTGGATCTGTGATGGAGACAACGACTGCGGAGACATGAGCGACGAGGACCAGAGACACAACTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102506-'49-56,'49-55,50-56=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=93.0)
A:
PF0005713=Ldl_recept_a=WD(100=92.7)
C2:
PF0005713=Ldl_recept_a=WD(100=88.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGCCAGAACACACCAAAT
R:
AGTTGTGTCTCTGGTCCTCGT
Band lengths:
243-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]