MmuEX6051989 @ mm10
Exon Skipping
Gene
ENSMUSG00000040249 | Lrp1
Description
low density lipoprotein receptor-related protein 1 [Source:MGI Symbol;Acc:MGI:96828]
Coordinates
chr10:127549317-127550307:-
Coord C1 exon
chr10:127550185-127550307
Coord A exon
chr10:127549908-127550033
Coord C2 exon
chr10:127549317-127549503
Length
126 bp
Sequences
Splice sites
3' ss Seq
CCCATGCCGATGCCTTGCAGCCC
3' ss Score
6.13
5' ss Seq
GTGGTAAGC
5' ss Score
8.15
Exon sequences
Seq C1 exon
CTGAGGTGACCTGCGCCCCCAACCAGTTCCAGTGCTCCATCACCAAGCGCTGCATCCCTCGCGTCTGGGTCTGTGACAGGGATAATGACTGTGTGGACGGCAGTGATGAGCCTGCCAACTGTA
Seq A exon
CCCAAATGACCTGTGGAGTGGATGAGTTCCGCTGCAAGGATTCTGGCCGCTGCATCCCCGCGCGCTGGAAGTGTGACGGAGAAGATGACTGTGGGGATGGTTCAGATGAGCCCAAGGAAGAGTGTG
Seq C2 exon
ACTCTAACATCTGCCGCCCACTCCACCCCTGACCGCCCCAATATCTGCCTCCACATCTTGCCTCCCCCAGATGAGCGCACCTGTGAGCCATACCAGTTCCGCTGCAAAAACAACCGCTGTGTCCCAGGCCGTTGGCAATGTGACTACGACAACGACTGCGGAGATAACTCGGACGAGGAGAGCTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040249-'119-111,'119-108,120-111=AN
Average complexity
A_C3
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=92.9)
A:
PF0005713=Ldl_recept_a=WD(100=93.0)
C2:
PF0005713=Ldl_recept_a=WD(100=92.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTTCCAGTGCTCCATCACC
R:
TCGTAGTCACATTGCCAACGG
Band lengths:
249-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types