RnoEX0050673 @ rn6
Exon Skipping
Gene
ENSRNOG00000025053 | Lrp1
Description
LDL receptor related protein 1 [Source:RGD Symbol;Acc:1307535]
Coordinates
chr7:70857289-70858240:-
Coord C1 exon
chr7:70858118-70858240
Coord A exon
chr7:70857844-70857969
Coord C2 exon
chr7:70857289-70857405
Length
126 bp
Sequences
Splice sites
3' ss Seq
CCCGAGCCGGTGCCTTGCAGCCC
3' ss Score
3.78
5' ss Seq
GTGGTAAGC
5' ss Score
8.15
Exon sequences
Seq C1 exon
CTGAGGTGACCTGTGCCCCCAACCAGTTCCAGTGCTCTATCACCAAGCGCTGCATCCCCCGAGTCTGGGTCTGCGACAGGGACAATGACTGTGTGGACGGAAGTGATGAACCTGCCAACTGCA
Seq A exon
CCCAGATGACCTGCGGGGTGGATGAGTTCCGCTGCAAGGACTCGGGCCGCTGCATCCCTGCACGCTGGAAGTGTGACGGAGAAGACGACTGTGGGGACGGCTCAGATGAGCCCAAGGAAGAGTGTG
Seq C2 exon
ATGAGCGCACCTGTGAGCCATACCAGTTCCGCTGCAAAAACAACCGCTGTGTGCCAGGCCGCTGGCAGTGTGACTATGACAATGACTGTGGAGATAACTCAGACGAGGAGAGCTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025053-'95-104,'95-102,97-104
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=92.9)
A:
PF0005713=Ldl_recept_a=WD(100=93.0)
C2:
PF0005713=Ldl_recept_a=WD(100=92.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGGTGACCTGTGCCCC
R:
GCAGCTCTCCTCGTCTGAGTT
Band lengths:
238-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]