HsaEX6067302 @ hg19
Exon Skipping
Gene
ENSG00000123384 | AC137834.1
Description
low density lipoprotein receptor-related protein 1 [Source:HGNC Symbol;Acc:6692]
Coordinates
chr12:57595280-57596320:+
Coord C1 exon
chr12:57595280-57595402
Coord A exon
chr12:57595563-57595688
Coord C2 exon
chr12:57596204-57596320
Length
126 bp
Sequences
Splice sites
3' ss Seq
CCATGCCCACCCGCTTGCAGCCC
3' ss Score
7.95
5' ss Seq
GTGGTGAGC
5' ss Score
6.64
Exon sequences
Seq C1 exon
CCGAGGTGACCTGCGCCCCCAACCAGTTCCAGTGCTCCATTACCAAACGGTGCATCCCCCGGGTCTGGGTCTGCGACCGGGACAATGACTGTGTGGATGGCAGTGATGAGCCCGCCAACTGCA
Seq A exon
CCCAGATGACCTGTGGTGTGGACGAGTTCCGCTGCAAGGATTCGGGCCGCTGCATCCCAGCGCGTTGGAAGTGTGACGGAGAGGATGACTGTGGGGATGGCTCGGATGAGCCCAAGGAAGAGTGTG
Seq C2 exon
ATGAACGCACCTGTGAGCCATACCAGTTCCGCTGCAAGAACAACCGCTGCGTGCCCGGCCGCTGGCAGTGCGACTACGACAACGATTGCGGTGACAACTCCGATGAAGAGAGCTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000123384-'80-83,'80-81,82-83=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=92.9)
A:
PF0005713=Ldl_recept_a=WD(100=93.0)
C2:
PF0005713=Ldl_recept_a=WD(100=92.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCCCAACCAGTTCCAGT
R:
TGCAGCTCTCTTCATCGGAGT
Band lengths:
226-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)