BtaEX6022083 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010830 | LRP1
Description
low density lipoprotein receptor-related protein 1 [Source:HGNC Symbol;Acc:HGNC:6692]
Coordinates
chr5:56571533-56572537:-
Coord C1 exon
chr5:56572415-56572537
Coord A exon
chr5:56572136-56572261
Coord C2 exon
chr5:56571533-56571649
Length
126 bp
Sequences
Splice sites
3' ss Seq
CCCCGGCCACCCCCTTGCAGCCC
3' ss Score
9.28
5' ss Seq
GTGGTGAGC
5' ss Score
6.64
Exon sequences
Seq C1 exon
CCGAGGTGACCTGTGCCCCCAACCAGTTCCAGTGTTCCATCACCAAGCGCTGCATCCCCCGGGTCTGGGTGTGCGACCGGGACAATGACTGTGTAGACGGCAGTGACGAGCCCGCCAACTGCA
Seq A exon
CCCAGATGACCTGCGGGGTGGACGAGTTCCGCTGCAAGGACTCAGGCCGCTGTATCCCGGCGCGCTGGAAGTGTGACGGAGAGGACGACTGCGGGGACGGCTCGGACGAGCCCAAAGAGGAGTGTG
Seq C2 exon
ACGAGCGCACCTGTGAGCCCTACCAGTTCCGCTGCAAGAACAACCGCTGCGTGCCAGGCCGCTGGCAGTGCGATTACGACAACGACTGCGGGGACAACTCTGACGAGGAGAGCTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010830-'72-84,'72-82,73-84=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=92.9)
A:
PF0005713=Ldl_recept_a=WD(100=93.0)
C2:
PF0005713=Ldl_recept_a=WD(100=92.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACCTGTGCCCCCAAC
R:
GCAGCTCTCCTCGTCAGAGTT
Band lengths:
234-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]