DreEX6080830 @ danRer10
Exon Skipping
Gene
ENSDARG00000029146 | lrp1ab
Description
low density lipoprotein receptor-related protein 1Ab [Source:ZFIN;Acc:ZDB-GENE-030131-7126]
Coordinates
chr23:25551597-25554031:-
Coord C1 exon
chr23:25553909-25554031
Coord A exon
chr23:25553384-25553509
Coord C2 exon
chr23:25551597-25551713
Length
126 bp
Sequences
Splice sites
3' ss Seq
TTTTTCTTTTCTTTTTACAGCTC
3' ss Score
12.71
5' ss Seq
GCGGTATGA
5' ss Score
7.46
Exon sequences
Seq C1 exon
CGGAGGTGACCTGCGCTCCTAACCAGTTCCAGTGTGCCATCACCAAACGCTGTATACCCCGAGTCTGGGTGTGCGATAGAGACTACGACTGTGTGGATGAGTCTGATGAACCAGCCAACTGCA
Seq A exon
CTCAGATGAAGTGTGGTGTAGATGAGTTCCGCTGTAAAGACTCAGGCCGCTGTATCCCGTCTCGCTGGACATGTGATGGAGAGGACGACTGCGGCGACGCCTCTGATGAACCCAAAGAGGAGTGCG
Seq C2 exon
ATGAGAGAACATGTGAGCCTTACCAGTTCCGCTGTAAGAACAACCGCTGTGTGCCGGGCCGCTGGCAGTGTGATTATGATAATGACTGTGGCGATAACTCAGATGAGGAGAAGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000029146-'69-79,'69-78,70-79=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=92.9)
A:
PF0005713=Ldl_recept_a=WD(100=93.0)
C2:
PF0005713=Ldl_recept_a=WD(100=92.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGTGACCTGCGCTCCTAA
R:
CTTCTCCTCATCTGAGTTATCGCC
Band lengths:
234-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]