DreEX6069528 @ danRer10
Exon Skipping
Gene
ENSDARG00000045070 | itgb3b
Description
integrin beta 3b [Source:ZFIN;Acc:ZDB-GENE-071207-2]
Coordinates
chr12:26344617-26348265:+
Coord C1 exon
chr12:26344617-26344896
Coord A exon
chr12:26345845-26345930
Coord C2 exon
chr12:26348061-26348265
Length
86 bp
Sequences
Splice sites
3' ss Seq
CATTTCCCTGTCTTTTCTAGGTT
3' ss Score
12.45
5' ss Seq
GAGGTGTGG
5' ss Score
4.48
Exon sequences
Seq C1 exon
GTATAGGCAACAGTTCCAGAACCCGCGGCAAATGTTCGTGAGTCGATCCCTCATATGCCCCCTCCCTCGAAAACAAGCTTTTACCACAATTTACTCTATATTTGGTGTTGGTCTGATGTCTGTGCTGGACCGTAAAGGAAAGGAAGAGGAGGGCGCAGACTGCACAAACCACCGGTGAAGTAGAGGAGAACAGCGATAACAACGATGGAGGAAACTTCAGCCAAACTCTTCAGCTTATGGATTTACTGTGTAATTATTTTCCTATCTGATGTTGGACTAG
Seq A exon
GTTCTAACGTCTGTACTTCTCGAGGAGCCAGTACATGTCAGCAGTGCCTGGCTGTGCATCCAACCTGTGCCTGGTGCTTTCAAGAG
Seq C2 exon
GATTTTGGACAAGATGTTCCTGGCTCTTCCCGATGTGACCTGAAAAGGAACCTTGTAGAAGCAGGATGCAACAAGGGAGCTCTGGAGTATCCAACCAGCAAAATGCACGTAAAAGAGAATGAAGATCTCAGTGACAAGGCCTCAGGATCCACCACTGACGTCACCCAGATCCAACCTCAAAGCATACACATCTCTCTGAGACCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045070-'2-3,'2-2,5-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.203
Domain overlap (PFAM):
C1:
NO
A:
PF0036213=Integrin_beta=PU(4.0=58.6)
C2:
PF0036213=Integrin_beta=FE(15.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGAAAGGAAGAGGAGGGCG
R:
ATCGGGAAGAGCCAGGAACAT
Band lengths:
180-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]