RnoEX0045249 @ rn6
Exon Skipping
Gene
ENSRNOG00000008346 | Itgb6
Description
integrin beta 6 [Source:RGD Symbol;Acc:1303119]
Coordinates
chr3:46722379-46726958:-
Coord C1 exon
chr3:46726700-46726958
Coord A exon
chr3:46725971-46726050
Coord C2 exon
chr3:46722379-46722583
Length
80 bp
Sequences
Splice sites
3' ss Seq
CCTTGGTTGTTTGCCCTTAGGTG
3' ss Score
10.36
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
Exon sequences
Seq C1 exon
GTTTTCATTTCAGTCTTAATGAAAGCTTTCGAATTTACAGCTCAAGTTACTTTTCAAAGCAGTGTAAGTAGTTTTACTTAAAAAAAAAAAAAAAAAAAAAAAACACTGCAAGAAAGACTTTCACGGCTTCCAGCTTTGGTCTTGTAACCCTGAAGGTAATTCATTTTTAATCTGTCTGCACAGTGAAAACTGAACCGAATGGGGATTGAGCTGGTCTGCCTGTTCCTGCTACTTCTAGGAAGGAATGATCACGTCCAAG
Seq A exon
GTGGCTGTGCCTGGAGTGGTGCAGAAACCTGCTCAGACTGCCTGCTCACAGGACCTCACTGCGCCTGGTGCTCCCAGGAG
Seq C2 exon
AATTTCACCCACCTGTCCGGAGCTGGCGAAAGGTGCGACACCCCCGAGAATCTTTTAGCCAAAGGATGTCAGTTACCCTTCATCGAAAACCCTGTCTCCCAAGTAGAAATACTTCAAAATAAGCCTCTCAGCGTAGGTCGACAGAAAAACAGTTCTGACATTGTTCAGATTGCTCCTCAAAGCTTGGTTCTTAAGTTGAGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008346-'6-3,'6-2,7-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0036213=Integrin_beta=PU(4.0=63.0)
C2:
PF0036213=Integrin_beta=FE(16.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGACTTTCACGGCTTCCAGC
R:
TCCGGACAGGTGGGTGAAATT
Band lengths:
167-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]