BtaEX0018553 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009080 | ITGB6
Description
Bos taurus integrin, beta 6 (ITGB6), mRNA. [Source:RefSeq mRNA;Acc:NM_174698]
Coordinates
chr2:36256562-36260215:+
Coord C1 exon
chr2:36256562-36256637
Coord A exon
chr2:36257395-36257474
Coord C2 exon
chr2:36260011-36260215
Length
80 bp
Sequences
Splice sites
3' ss Seq
CTTGCTGGGTTTGAACACAGGTG
3' ss Score
4.92
5' ss Seq
GAGGTAAAA
5' ss Score
7.3
Exon sequences
Seq C1 exon
CGAGAACTGAAACGGATGGGGATTGAACTGCTTTGCCTGTTCTTTCTATGTCTAGGAAGGAATGATCACGTACAAG
Seq A exon
GTGGCTGTGCTGTGGGGGGTGCGGAGACCTGTGAGGACTGCTTACTCATTGGACCTCAGTGTGCCTGGTGTTCTCAGGAG
Seq C2 exon
AATTTTACGCACCTATCTGGAGTTGGAGAAAGATGTGATACCCCAGCAAATCTTTTAGCTAAAGGATGTCAACTAACCTTCATCGAAAACCCTGTCTCCCAAGTTGAGATACTTACAAATAAGCCTCTCAGCATAGGCAGACAGAAAAATAGCTCCGACATCGTTCAGATTTCACCTCAAAGCTTGGCTCTTAAACTGAGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009080_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0036213=Integrin_beta=PU(4.0=63.0)
C2:
PF0036213=Integrin_beta=FE(16.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACGGATGGGGATTGAACTGC
R:
TCTCAACTTGGGAGACAGGGT
Band lengths:
175-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development