DreEX0040155 @ danRer10
Exon Skipping
Gene
ENSDARG00000056767 | itgb3a
Description
integrin beta 3a [Source:ZFIN;Acc:ZDB-GENE-071207-1]
Coordinates
chr3:19471303-19474862:+
Coord C1 exon
chr3:19471303-19471414
Coord A exon
chr3:19474454-19474539
Coord C2 exon
chr3:19474658-19474862
Length
86 bp
Sequences
Splice sites
3' ss Seq
TTCCCTGGTTTTGTTTCTAGGCT
3' ss Score
9.97
5' ss Seq
GAGGTAATA
5' ss Score
7.96
Exon sequences
Seq C1 exon
GCAAGCAGAGGTGTTACAGCAGGAGGCCTTCAGTCTTCTGGATCTATTAAAATGGGACTAAACTTGATAAAAGTTTGGATGCCAGTTTTGCTTCTCATTTCCATCGCTAAAG
Seq A exon
GCTCTAATATTTGCACTTCTAGAGGAGTCAGTACCTGTAAAGAATGTCTTTCGATTCACCCGACTTGTGCCTGGTGCTCTCAGGAG
Seq C2 exon
GTCTTTCAAAAGGGAGGGTCGGCCCTGTCTCGCTGTGATCTGAAAGACAATATCATTCAGTCTGGATGTTCTGGGAAGTTTATTGAGTTTCCGGTCAGCAGTGTGAAGATAGTTGAGAACATACCTCTGAGTGACAAGGCTGGGGGTTCAGGCAGTGACATCACTCAGATCCAACCTCAAAAAATACAGCTCACCCTCAGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056767-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0036213=Integrin_beta=PU(4.0=58.6)
C2:
PF0036213=Integrin_beta=FE(15.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATGCCAGTTTTGCTTCTCA
R:
CCAGCCTTGTCACTCAGAGGT
Band lengths:
180-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]