MmuEX0024670 @ mm9
Exon Skipping
Gene
ENSMUSG00000020689 | Itgb3
Description
integrin beta 3 [Source:MGI Symbol;Acc:MGI:96612]
Coordinates
chr11:104469370-104493683:+
Coord C1 exon
chr11:104469370-104469478
Coord A exon
chr11:104484725-104484810
Coord C2 exon
chr11:104493488-104493683
Length
86 bp
Sequences
Splice sites
3' ss Seq
TCCTTGCCTCTTTGTTGCAGAGT
3' ss Score
9.75
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
GGCGCGCGCGCGGCGTGAAGGGCGGCGGACAGGATGCGAGCGCAGTGGCCGGGACAACTCTGGGCCGCTCTGCTGGCGCTGGGGGCGCTGGCGGGCGTTGTTGTTGGAG
Seq A exon
AGTCCAACATCTGTACCACACGAGGCGTGAACTCCTGCCAGCAGTGTCTGGCTGTGAGTCCTGTGTGTGCCTGGTGCTCAGATGAG
Seq C2 exon
ACTTTGTCTCAGGGCTCACCCCGATGTAACCTGAAGGAGAACCTGCTGAAGGACAATTGTGCTCCAGAGTCTATTGAGTTCCCAGTCAGTGAGGCCCAGATCCTGGAGGCTAGGCCACTCAGCAGCAAGGGCTCTGGAAGCAGCGCCCAGATCACTCAAGTCAGCCCTCAGAGGATTGCCCTTCGACTACGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020689_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.045
Domain overlap (PFAM):
C1:
NO
A:
PF0036213=Integrin_beta=PU(4.0=58.6)
C2:
PF0036213=Integrin_beta=FE(15.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGGCGTTGTTGTTGGAG
R:
CTGACTTGAGTGATCTGGGCG
Band lengths:
183-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: