GgaEX0028260 @ galGal3
Exon Skipping
Gene
ENSGALG00000000379 | F1NS08_CHICK
Description
NA
Coordinates
chr27:2207028-2214834:+
Coord C1 exon
chr27:2207028-2207780
Coord A exon
chr27:2210952-2211037
Coord C2 exon
chr27:2214642-2214834
Length
86 bp
Sequences
Splice sites
3' ss Seq
CTCTGTTTTGATGTTCCAAGGGA
3' ss Score
6.43
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
TGTGCTCTGTTTCCCCTTAAATCCTCGGGCTCTGGAGCAGCTCAGCCTCAGCAAGTTTAAAACCCGCGCGGCCGAAAGGGTTAATGAAGGGAGGGAAGTGAGCGAGGTTTTGCAAGCAATTAAACCCAGCAGAAGAGCCTATGGGAACATAGAACATTGCAGCGGGTCAGCAGCGCCCTACGCTTTGCGTCTAGGTTCGTGAAGTCCTTCTATGAGCCGAGAGAAGGAATAAGCACGGGGAGCTCCGGGGGCAGGACGGGAGGGGGCACTGCCCGACTCCAACCCGAGTGACGCAGCGTAGCTTCCTCCGGCCGCCCCGCTCCGTGTGTATGTGTGTCACACACACCCAGCGCATGATTCATCCCTTGGACGGCTCAAAACCATCTCCAAGTCGCACGGCGGGGCCGTCCCACACCCCTGTAGCCGGGGTTCGGAGGAGGAGATGGAGGAACTCCGCGTCGCTTTCAGCATCCTGGTGCTCTGCGCTGCTGGCAGCTGGG
Seq A exon
GGAGTAACATCTGCGCTACCCGAGGGGTGACCTCCTGCAAGCAGTGCCTGGCCGTCAGCCCCCTCTGTGCATGGTGCTCTGCAGAG
Seq C2 exon
GTGGTGGCACAGTCGACCCCACGTTGCGACCTGTTTGCCAACCTCCTGCAGAACGGCTGCGGGAGGGACTTCATTGAGTTTCCCAGGAGCAGCATCACAGTCCTGGAGGAGCGGCCGCTCAGTGATAAGGGCTCAGGGGGGTCCACCACCACCCAAATGAGCCCCCAGAGGATCCAGCTGAACCTGCAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000379_CASSETTE1
Average complexity
S*
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.323
Domain overlap (PFAM):
C1:
NA
A:
PF0036213=Integrin_beta=PU(4.0=60.7)
C2:
PF0036213=Integrin_beta=FE(15.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCGGAGGAGGAGATGGAGG
R:
GATGCTGCTCCTGGGAAACTC
Band lengths:
168-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]