DreEX0040188 @ danRer10
Exon Skipping
Gene
ENSDARG00000002494 | itgb6
Description
integrin, beta 6 [Source:ZFIN;Acc:ZDB-GENE-100812-2]
Coordinates
chr11:10991685-11004083:+
Coord C1 exon
chr11:10991685-10991955
Coord A exon
chr11:11002449-11002528
Coord C2 exon
chr11:11003885-11004083
Length
80 bp
Sequences
Splice sites
3' ss Seq
GCGCTGTTGTGTGTATGCAGGGA
3' ss Score
7.76
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
TCTCGCTCGCTAATGAAGAAGCTTCAAGCTGTGTGTGAAGCCCTACAGTTGCTGCCGTCATTCATGCACAAAAGTGTGTGTGTATGTGAGAAAAAAGGGGCTGAGGAAGGGAGCGCAGGCGTCATGCTCCATAAAATCTCTGTATAGTTTGAGCGTCCTATTGCTTCCGACCCACACTTCCAGTCGGACAGATATTCACACACTGCAGTTATCGCCGTATCCCACTTGCCTCTGTGGTTTTGGTATTGAGAGAGAGGACAGCATGCTAGCA
Seq A exon
GGACGTGTTCTCAGATCAGTGCTCTCTCTTGTGACGATTGTCTGCAGCTCGGGCCACAGTGCGCTTGGTGCACACTACAG
Seq C2 exon
AACTTCACAGATTTTTTCCCAGTTGATGAGAGATGCGACACACCGGAGGCTCTTCTCCAGAAGGGATGCTCTGGCGAATTTGTGGAATTTCCCGTCACGAACGTCAAAGTACTGAAGGATCAAGGTTTAGGAAAGAACTCAGGCCACACCAATGTGTCATACATCGCACCGCAGAAGATGCGCCTCCAGCTTAGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000002494_MULTIEX1-2/11=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0143720=PSI=PU(48.1=92.6),PF0036213=Integrin_beta=PU(9.0=63.0)
C2:
PF0143720=PSI=PD(48.1=37.3),PF0036213=Integrin_beta=FE(34.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGAGGACAGCATGCTAGCA
R:
GGTGTGGCCTGAGTTCTTTCC
Band lengths:
171-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]