GgaEX6018544 @ galGal4
Exon Skipping
Gene
ENSGALG00000007145 | ITGB1
Description
integrin beta-1 precursor [Source:RefSeq peptide;Acc:NP_001034343]
Coordinates
chr2:13993192-13995191:+
Coord C1 exon
chr2:13993192-13993261
Coord A exon
chr2:13993497-13993582
Coord C2 exon
chr2:13994969-13995191
Length
86 bp
Sequences
Splice sites
3' ss Seq
CTATCTGTGTTCTTTCATAGGTG
3' ss Score
11.81
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
ACTAATTTAACATTGCTCACGTGGGCTGGCATTCTCTGTTGCTTGATATGGAGTGGATCTGCTCAGCAAG
Seq A exon
GTGGAAGTGACTGCATAAAAGCCAACGCAAAATCATGTGGGGAATGTATACAGGCAGGACCAAACTGTGGTTGGTGTAAAAAAACA
Seq C2 exon
GACTTTCTGCAAGAAGGAGAACCAACATCTGCCCGATGCGATGACTTGGCAGCGCTGAAGAGTAAAGGCTGTCCTGAGCAAGATATAGAAAATCCCAGAGGTAGCAAACGTGTGCTTGAAGATAGAGAAGTAACAAATCGTAAGATAGGTGCTGCAGAGAAGCTGAAACCAGAGGCCATTACACAGATCCAGCCACAAAAATTAGTACTGCAACTAAGAGTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007145-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.156
Domain overlap (PFAM):
C1:
NO
A:
PF0036213=Integrin_beta=PU(3.9=58.6)
C2:
PF0036213=Integrin_beta=FE(17.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAACATTGCTCACGTGGGCTG
R:
CACACGTTTGCTACCTCTGGG
Band lengths:
177-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]