HsaEX6088104 @ hg38
Exon Skipping
Gene
ENSG00000150093 | ITGB1
Description
integrin subunit beta 1 [Source:HGNC Symbol;Acc:HGNC:6153]
Coordinates
chr10:32929822-32935558:-
Coord C1 exon
chr10:32935492-32935558
Coord A exon
chr10:32932515-32932600
Coord C2 exon
chr10:32929822-32930044
Length
86 bp
Sequences
Splice sites
3' ss Seq
TTCTTTCTTCTTTCTGACAGATG
3' ss Score
11.35
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
Exon sequences
Seq C1 exon
ATGAATTTACAACCAATTTTCTGGATTGGACTGATCAGTTCAGTTTGCTGTGTGTTTGCTCAAACAG
Seq A exon
ATGAAAATAGATGTTTAAAAGCAAATGCCAAATCATGTGGAGAATGTATACAAGCAGGGCCAAATTGTGGGTGGTGCACAAATTCA
Seq C2 exon
ACATTTTTACAGGAAGGAATGCCTACTTCTGCACGATGTGATGATTTAGAAGCCTTAAAAAAGAAGGGTTGCCCTCCAGATGACATAGAAAATCCCAGAGGCTCCAAAGATATAAAGAAAAATAAAAATGTAACCAACCGTAGCAAAGGAACAGCAGAGAAGCTCAAGCCAGAGGATATTACTCAGATCCAACCACAGCAGTTGGTTTTGCGATTAAGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000150093_MULTIEX1-3/3=C1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.553
Domain overlap (PFAM):
C1:
PF0143720=PSI=PU(12.3=34.8)
A:
PF0143720=PSI=PU(46.3=86.2),PF0036213=Integrin_beta=PU(15.5=58.6)
C2:
PF0143720=PSI=PD(47.6=40.0),PF0036213=Integrin_beta=FE(48.7=100)
Main Skipping Isoform:
ENST00000302278fB17784
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTTGCTGTGTGTTTGCTCA
R:
CTGCTGTTCCTTTGCTACGGT
Band lengths:
183-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains