BtaEX6063994 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015910 | ITGB1
Description
Bos taurus integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) (ITGB1), mRNA. [Source:RefSeq mRNA;Acc:NM_174368]
Coordinates
chr13:20265785-20271731:+
Coord C1 exon
chr13:20265785-20265851
Coord A exon
chr13:20267903-20267988
Coord C2 exon
chr13:20271509-20271731
Length
86 bp
Sequences
Splice sites
3' ss Seq
ATTTTTCTTTTTCCTAACAGATG
3' ss Score
11.51
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
Exon sequences
Seq C1 exon
ATGAATTTACAACTGATTTTCTGGATCGGATTGATCAGTTCAGTTTGCTGTGTGTTTGGCCAAGCAG
Seq A exon
ATGAAAACAGATGTTTGAAAGCAAATGCCAAATCATGTGGGGAGTGTATACAAGCAGGGCCAAATTGTGGATGGTGCACAAATTCA
Seq C2 exon
ACATTTTTACAAGAAGGTATGCCTACATCTGCTCGATGTGATGATTTAGAAGCCTTAAAAAAGAAGGGCTGTCATCCAAATGACATTGAAAATCCTAGAGGCTCCAAAGATATAAAGAAAAATAAAAATGTAACGAATCGAAGCAAAGGAACAGCAGAGAAGCTGCAGCCAGAAGATATCACTCAAATCCAGCCACAGCAGTTGGTTCTGCAGTTACGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015910-'19-8,'19-6,20-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.507
Domain overlap (PFAM):
C1:
NO
A:
PF0036213=Integrin_beta=PU(3.9=58.6)
C2:
PF0036213=Integrin_beta=FE(17.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTGCTGTGTGTTTGGCCAA
R:
TCTGCTGTTCCTTTGCTTCGA
Band lengths:
183-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]