MmuEX6039480 @ mm10
Exon Skipping
Gene
ENSMUSG00000025809 | Itgb1
Description
integrin beta 1 (fibronectin receptor beta) [Source:MGI Symbol;Acc:MGI:96610]
Coordinates
chr8:128705413-128710475:+
Coord C1 exon
chr8:128705413-128705479
Coord A exon
chr8:128707074-128707159
Coord C2 exon
chr8:128710253-128710475
Length
86 bp
Sequences
Splice sites
3' ss Seq
TTTTGTTTCTTTTCTAACAGATA
3' ss Score
11.12
5' ss Seq
ACGGTAAGA
5' ss Score
10.65
Exon sequences
Seq C1 exon
ATGAATTTGCAACTGGTTTCCTGGATTGGATTGATCAGTTTGATTTGTTCTGTATTTGGCCAAACAG
Seq A exon
ATAAAAATAGATGTTTAAAAGCAAATGCCAAATCTTGCGGAGAATGTATACAAGCAGGGCCAAATTGTGGGTGGTGTACAAATACG
Seq C2 exon
ACATTTTTGCAAGAAGGAATGCCTACTTCTGCACGATGTGATGATTTAGAAGCTTTGAAAAAGAAGGGTTGCCAGCCAAGTGACATAGAGAATCCCAGAGGCTCTCAAACTATAAAGAAAAATAAAAATGTCACCAATCGCAGCAAAGGGATGGCAGAGAAGCTCCGGCCAGAAGACATTACTCAGATCCAACCACAACAGCTGCTTCTAAAATTGAGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025809-'10-12,'10-9,13-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.467
Domain overlap (PFAM):
C1:
PF0143720=PSI=PU(10.9=30.4)
A:
PF0143720=PSI=FE(66.7=100),PF0036213=Integrin_beta=PU(70.8=58.6)
C2:
PF0143720=PSI=PD(42.2=36.0),PF0036213=Integrin_beta=FE(17.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAACTGGTTTCCTGGATTGG
R:
TGAGAGCCTCTGGGATTCTCT
Band lengths:
167-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types