RnoEX0045181 @ rn6
Exon Skipping
Gene
ENSRNOG00000010966 | Itgb1
Description
integrin subunit beta 1 [Source:RGD Symbol;Acc:2927]
Coordinates
chr19:61697092-61702455:+
Coord C1 exon
chr19:61697092-61697158
Coord A exon
chr19:61698692-61698777
Coord C2 exon
chr19:61702233-61702455
Length
86 bp
Sequences
Splice sites
3' ss Seq
TTTTGTTTCTTTTTTAACAGATA
3' ss Score
10.88
5' ss Seq
ACGGTAAGA
5' ss Score
10.65
Exon sequences
Seq C1 exon
ATGAATTTGCAACTGGTTTTCTGGATTGGATTGATCAGCTTGATTTGTTCTGTATTTGGCCAAACAG
Seq A exon
ATAAAAATAGATGTTTAAAAGCAAATGCCAAATCTTGTGGAGAATGTATACAAGCAGGGCCAAATTGTGGGTGGTGTACAAATACG
Seq C2 exon
ACATTTTTACAAGAAGGAATGCCTACTTCTGCACGATGTGATGATTTAGAAGCTTTGAAAAAGAAGGGTTGCCAACCAAGTGACATAGAGAATCCCAGAGGCTCCCAAACTATAAAGAAGAATAAAAACGTCACCAATCGCAGCAAAGGGATGGCAGAGAAGCTCCGGCCAGAAGACATTACTCAGATCCAACCACAACAGCTGCTTCTAAAGTTGCGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010966-'5-4,'5-2,6-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.440
Domain overlap (PFAM):
C1:
NO
A:
PF0036213=Integrin_beta=PU(3.9=58.6)
C2:
PF0036213=Integrin_beta=FE(17.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAACTGGTTTTCTGGATTGGA
R:
AGTTTGGGAGCCTCTGGGATT
Band lengths:
171-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]