DreEX6070291 @ danRer10
Exon Skipping
Gene
ENSDARG00000075857 | PGS1
Description
phosphatidylglycerophosphate synthase 1 [Source:HGNC Symbol;Acc:HGNC:30029]
Coordinates
chr12:34148735-34157032:-
Coord C1 exon
chr12:34156905-34157032
Coord A exon
chr12:34150628-34150829
Coord C2 exon
chr12:34148735-34148812
Length
202 bp
Sequences
Splice sites
3' ss Seq
TACTTCCTGTAATCCTGCAGGTC
3' ss Score
8.67
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
Exon sequences
Seq C1 exon
AGTCAGTAAAACATGGCGGCGCCCATGAAATGGAAAAGACTTGTGTTCTCTGCGTATACTCCAGCCTTTTCCTGGGTTTTCACAAGGATAACAGACCGCTTTTTCAGGGCACATGATCGGAGGAGAGG
Seq A exon
GTCTGCGGTGCTGCTTTTGGCTCCTCTCCTGGCAGAGGCAGATTCAGCACCCCTGGCCTCCTCCAGACCTCCAGGCTTCACTGGCGTCGAGAGCCTTCACTCCCGCTTCCACTGGATGGCGGATCATGTACCGGCTTTCAAAGTCCCTGGGGGCCACATTCGCGTCCTCCACTCACCTGATGAGTTTTATCAAGCCATGAAG
Seq C2 exon
GCTCGTATCAAGACAGCCAAGAGTCGTGTGGTGATGGCATCTCTGTATCTGGGCACAGGACCACTAGAGCAAGACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000075857-'0-3,'0-2,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.015 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF130911=PLDc_2=PU(0.6=1.5)
C2:
PF130911=PLDc_2=FE(15.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCAGTAAAACATGGCGGCG
R:
AGGTCTTGCTCTAGTGGTCCT
Band lengths:
205-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]