RnoEX0065186 @ rn6
Exon Skipping
Gene
ENSRNOG00000002949 | Pgs1
Description
phosphatidylglycerophosphate synthase 1 [Source:RGD Symbol;Acc:1305052]
Coordinates
chr10:106994666-107008124:+
Coord C1 exon
chr10:106994666-106994766
Coord A exon
chr10:107005272-107005461
Coord C2 exon
chr10:107008047-107008124
Length
190 bp
Sequences
Splice sites
3' ss Seq
TTGCATGTTTCCATAACCAGGTC
3' ss Score
8.52
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
AGGCGGCTGCTGGGCCTGCTGCCTGGCCGGCCCGGGCTGGCCGCGCTCCTGGGCCGCCTCTCCGACCGTCTGGGCAGGAGCCGGGAGCGCCGGCGCCGGAG
Seq A exon
GTCACCATGGCTGTTACTGGCTCCCTTGCTGTCACCAACTGTTCCTCAGGTCACTTCCCCACCTTGCTGCCTATGTCCCGAGGGTGTGCACCGGTTCCAGTGGATCAGAAACCTGGTCCCAGAATTTGGAGTCTCCAGCTCTCATGTAAGGGTGCTGTCTTCCCCTGCAGAGTTCTTCGAGCTCATGAAG
Seq C2 exon
GGGCAGATAAAAATAGCCAAGAGGCGAGTTGTGATGGCATCCCTTTACTTGGGGACAGGACCTTTGGAACAGGAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002949-'1-2,'1-0,10-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF130911=PLDc_2=PU(0.6=1.6)
C2:
PF130911=PLDc_2=FE(15.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCTCCGACCGTCTGGG
R:
AGTTCCTGTTCCAAAGGTCCTG
Band lengths:
122-312
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]