DreEX6070630 @ danRer10
Exon Skipping
Gene
ENSDARG00000074041 | abca5
Description
ATP-binding cassette, sub-family A (ABC1), member 5 [Source:ZFIN;Acc:ZDB-GENE-050517-5]
Coordinates
chr12:38670220-38672059:+
Coord C1 exon
chr12:38670220-38670390
Coord A exon
chr12:38670515-38670628
Coord C2 exon
chr12:38671922-38672059
Length
114 bp
Sequences
Splice sites
3' ss Seq
ACTCGTTTCTTCTTTTTCAGGCT
3' ss Score
10.81
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
CTGAAGTGTCGCTCAACGTTGAGGATCTCTGGTCTTGTTCCTTCTGCGTACTGGTGCGGTCAGGCAGCTATCGATGTCCCGTTCTATTATCTGATCTTAACCTGCATGACCAGCACCCTCTTTGCCTTCCATTCTACAAACCTGCTAACCTCTCATAACATCTTGTCTGTG
Seq A exon
GCTCTTTGTCTGATTGGCTTTTCTCCAGCCATGGTTCTCTTCACATACTGCGTGTCCTTCATGTTTGTCAGAGTCCAGAGCAATAGAGACTTCTTCTCTGTTGTCTCAATGATG
Seq C2 exon
GTGTGTGTGGTTTCTGCATCCATAGTCCAGCTGGCTCTTGTGAACGAAAGTGCATCTATGGCTCGTCTCCTCCACAATGCACTGTGTTTCTTCAGTCCACTCTACCCTCTAATGGGCTGCCTTAACTGCATTACTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074041-'27-32,'27-31,28-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(15.5=100)
A:
PF126982=ABC2_membrane_3=FE(10.2=100)
C2:
PF126982=ABC2_membrane_3=FE(12.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGTGTCGCTCAACGTTGA
R:
GTGCATTGTGGAGGAGACGAG
Band lengths:
252-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]